The MSU Rice Genome Annotation Project Database and Resource is a National Science Foundation project and provides sequence and annotation data for the rice genome (http://rice.uga.edu/)
A major objective of this project is to facilitate a comprehensive analysis of the genome structure and function of rice on the basis of the annotation (https://rapdb.dna.affrc.go.jp).
The GBrowse helps browse the rice genome (IRGSP 1.0) and genes for structural and functional annotation (https://rapdb.dna.affrc.go.jp/viewer/gbrowse/irgsp1/).
NCBI’s web tool to compare nucleotide or protein sequences to sequence databases and calculate the statistical significance (https://blast.ncbi.nlm.nih.gov/Blast.cgi).
A tool for comparative plant genomics (https://www.plantgdb.org/).
Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species (https://www.gramene.org/).